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The zebrafish genome project is a collaboration between the Sanger Institute and the zebrafish community, announced during the Sanger Institute Zebrafish Workshop 2000 and was started in February 2001.
This Ensembl website features the zebrafish
assembly version 7 (Zv7), as released on 13 July 2007. This assembly was
produced by integrating finished clone sequence from the physical map
with whole genome shotgun assembly sequence (more
information).
The zebrafish sequencing project is funded by the Wellcome Trust.
You may export data from this site. Please see the Conditions of use for these data.
This site provides a full Ensembl gene set for Zv7. This release is based on a strategy where transcripts are generated based on protein evidence and clustered in genes. Aligned zebrafish cDNAs are used to add UTR regions. Genes are named based on the alignment of their coding regions to known entries in public databases; ZFIN genes have priority in this process.
Some important changes have been made to Ensembl GO projections, in collaboration with the team at GOA.
Read more...
A number of changes have been made to the external database references (Xrefs) for various species.
Read more...
| Assembly: | Zv7, Apr 2007 |
| Genebuild: | Ensembl, Jun 2007 |
| Database version: | 47.7a |
| Known protein-coding genes: | 17,330 |
| Projected protein-coding genes: | 1,495 |
| Novel protein-coding genes: | 2,497 |
| Pseudogenes: | 98 |
| RNA genes: | 4,053 |
| Genscan gene predictions: | 45,287 |
| Gene exons: | 232,290 |
| Gene transcripts: | 31,841 |
| SNPs: | 1,914 |
| Base Pairs*: | 1,527,000,581 |
| Golden Path Length**: | 1,440,582,308 |
| Most common InterPro domains: | Top 40 Top 500 |
* Total number of base pairs = sum of lengths of DNA table
** Reference assembly (Golden path) length = sum of non-redundant top level seq regions
© 2008 WTSI / EBI. Ensembl is available to download for public use - please see the code licence for details.
