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Ensembl Mouse is based on the NCBI m37 mouse assembly (April 2007, strain C57BL/6J).
The Mouse Genome Sequencing Consortium is a joint project between
The Whitehead Institute/MIT Center for Genome Research,
The Washington University Genome Sequencing Center,
The Wellcome Trust Sanger Institute
and EMBL - EBI to provide the Mouse genome sequence to the world.
We work closely with other Mouse groups to provide an integrated resource (see below for credits).
There are some major changes in the assembly from version m36; for more details see the NCBI build statistics .
For release 47 the gene annotation presented has been a combined Ensembl-Havana geneset, which incorporates more than 15,000 full-length protein-coding transcripts annotated by the Havana team in addition to the Ensembl automatic gene build. The mouse genome sequence is now considered sufficiently stable that since September 2006 the major genome browsers have come together to produce a common set of identifiers where CDS annotations of transcripts can be agreed and these identifiers are also shown.
Modifications to the systems have further improved the gene set. 95% of the known genes and 47% of the novel genes from build m36 retain the same Ensembl gene ids in this release.
A new genebuild is now available for the latest Mus musculus assembly, NCBI m37.
Read more...
Ensembl 47 sees a new version of the regulatory build for Human, including extensive CD4 data.
Read more...
| Assembly: | NCBI m37, Apr 2007 |
| Genebuild: | Ensembl, Apr 2007 |
| Database version: | 47.37 |
| Known protein-coding genes: | 22,188 |
| Novel protein-coding genes: | 1,598 |
| Pseudogenes: | 1,221 |
| RNA genes: | 3,014 |
| Immunoglobulin/T-cell receptor gene segments: | 482 |
| Genscan gene predictions: | 72,043 |
| Gene exons: | 250,308 |
| Gene transcripts: | 41,067 |
| SNPs: | 12,190,841 |
| Base Pairs*: | 3,420,842,930 |
| Golden Path Length**: | 2,716,965,481 |
| Most common InterPro domains: | Top 40 Top 500 |
* Total number of base pairs = sum of lengths of DNA table
** Reference assembly (Golden path) length = sum of non-redundant top level seq regions
© 2008 WTSI / EBI. Ensembl is available to download for public use - please see the code licence for details.
